Thanks Martin and Paul for the reply, the mount is polar aligned in a observatory it had two scopes side by side so I had a 90 deg. offset programed in which let the goto work correctly as the home position.I manually park it on its side so I can close the roof but the pointing was getting a little off target so I did the auto home bit added 90 deg. offset then the tube moved to point at the south pole as it should. I completed the two star align, the second star was dead center in the camera with no corrections but when I hit enter the warning about NPE came up what ever that is? After the object slew missed I sent the mount to the home position and the RA shaft was about 30 deg. from being strait down.
Last night I removed the side by side saddle plate and just had a single normal setup did every thing again removing the home offset but got the same error message, the mount still had the same problem. Last resort I cancelled the factory settings and reinstalled my settings but still ended up with the same result.