I had this problem with my MX two builds ago.
I never had this issue before, as soon as I installed build 6934, I had the exact same error as you have mentioned. It was nothing to do with a hardware problem.
I posted this problem with a video of the motor running in the balance position to the SB forum. It showed that when the motor was running and then aborted it would stop, then run at full speed in the opposite direction. See this link
http://www.bisque.com/sc/forums/t/18...px?PageIndex=1
I also noted that when the mount was slewing to a target it would over shoot and reverse to come back to the target. This reverse was causing the stall.
Now I have the latest build for Mac and the problem has miraculously gone away.
I don't know what caused this error, I do know it was something to do with OS 10.8.2, It did not occur on an older Mac running 10.6.8.
I have been running the latest build and doing a lot of other testing, I have not had one problem. Every thing is back to normal.
I don't know what OS you are using or what build of The SkyX. Install the latest build if you have not already done so.
Cheers
Phil