Thanks.
An update. here is an image based on the first image (2x 300sec ISO 400 shots, 50mm F4). This time I sort of split the difference. That is I opened the RAWS in the canon software (Digital Photo professional 2.0), saved them as 16 bit Tiffs, did the same with a 300 sec dark. then opened them in Iris and subtracted the dark, expecting to get the dreaded coloured spots on the nebula as one gets that unless you open the RAWs in iris as monochrome CFA. However the coloured spots were not very apparent, nor were the ugly bright green spots, so I then saved the result as a Tiff then opened that in PS CS and neutralised the sky background colour (using Curves Midpoint and clicking on a starless area) and stretched the levels slightly. Thats It. I cropped the Eta carina part and put it here.
Note, theres a little "star bloat" mainly around brighter red stars (I dont yet have an IR/UV cut filter) I actually thought that without the filter the star bloat would be worse than it is

Scott