Have you posted your issue on the open PHD2 forum ?
https://groups.google.com/g/open-phd-guiding
I’ve been a member for 4 years and have resolved many issues with the group over that time.
Bruce and others are always interested in new problems arising from PHD2 being open and launched by acquisition software like SGP and APT
Me I prefer to run PHD2 as a standalone application and only use APT to send a dither command. Less links to break in the daisy chain
Cheers
Martin