I've been ironing out a few bugs and have finally got things playing ball.
I wrote a step by step start up procedure so all the equipment/software communicates properly.
This is an image consisting of 1 hour of data (11 x 5min subs + 5 x 1 min).
QHY163C (Gain 100, Offset 50) through the 102mm Triplet on the NEQ6.
No calibration as yet but will revisit it when I have time.