Hi Carl,
Only a new user of deep sky stacker myself. I have had similar probs as to getting the final stacked image nice and sharp. For some reason it rotates some frames hence not lining them up correctly.., mind you it took 4 hours to do it. Shot of LMC with 135mm lense with no rotation evident in any frame. Yet on other photos it does a good job when registax falls over..
I suppose some programs do a better job than others on different sets....

Registax stacked this set in about 10min and nicely lined up too.
As for being dark you have to adjust the lightness at the end by going to the luminance tab and pulling the sliders to the left to lighten the image I think there are highlghts, midtones and shadows. There are seperate ones for RGB levels as well on the first tab and you can adjust to get a well balanced background..you have to hit the apply button everytime you change something but....
Sorry can`t help any more as still learning how to use myself.
Cheers Gary...