G'Day Chris,
This pretty easy to do if I've interpreted your need correctly

.
After alignment - but before you press the Limit button - grab the slider at the bottom of the screen and drag it to the number of frames you want to include. This will manually override the quality setting.
My usual processing procedure is to MAP align then drag the slider to about 150 frames before pressing the Limit button. So from there on I'm only working with the best 150 frames!

Al.