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There's no difference between ser and avi format, they are just containers for the original frames. Debayer in AS!3, not PIPP as AS!3 does it much better. Do not use Registax for stacking, it's far inferior to AS!3.
There's really no need to use PIPP if you have a tracking mount, PIPP is really good for centring when the planet is near the edge of the frame, and excellent for removing "half planets" when it moves off the sensor, but AS!3 does it really well when the planet is in or near the centre of the frame.
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