Hi Sandy - I have a slightly different setup to yours only because I purchased my software a while back. I'm currently connected to Gemini 2 using Ethernet to laptop and using the following software:
1. Stellarium scope for Gemini 2 (Which I haven't had chance to test yet) -
http://cooledpix.com/2012/05/09/g11-gemini-ii-ascom/
2. Will use PHD for guiding and drift alignment
3. Will use nebulosity for post processing
I have downloaded PEMPRO and have no idea how to use it so will probably target this first when the skies clear.
Let us know when you start addressing your PE issues. Would love to understand what drove your PE so high.
Regards