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Thanks guys.
Mark it is not as hard as you might think. You image so that you have overlapping detail, most of the time around 3/4 of each panel. Then I process each avi in avistack. Then I layer each panel on a black background in photoshop. When I have each one perfectly aligned with the other panels I highlight all the layers and then click autoblend in the edit menu. I then flatten the whol image. Most of the time is works pretty well, except when I have the original etalon settings not quite even at capture. Colouring is a personal thing really and that is easy enough to do.
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