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Hi Dougarooney
Having poor seeing during the colour data collection will have no effect on the final result (as long as you don't add it to the Lum layer before an LRGB combine). You can have pretty crap RGB data and still get a top image. Basically if you get rid of any gradients (not that you have any here) in the RGB version before combining with the Ha/Lum then you should be fine as the detail is only supplied by what ever you use as your Lum layer (Ha or Lum?),
You could try turning up the saturation a tad..?
Mike
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