Carl, not sure how much you've used your Eq6 but it may be that you haven't set the handbox correctly in the first place. You need to set the tracking rate to sidereal, if you intend to use goto you'll also need to set the clock and Time zone and Lat/Long.
You can download a
Synscan manual here note that you'll need to get the V3.0 manual then the updated addon PDF's for 3.xx