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I haven't managed to play around with v2 yet, although I do have it. In fact, I never played with v1 either, as I love IRIS. But, do you have to still do the star snap step? How does v2 handle rotated/mirrored files?
I just issue one command in IRIS:
coregister2 infiles outfiles numfiles
and away it goes and registers (transforms, scales, rotates, etc.) everything without any manual intervention.
infiles: name of input sequence, such as light (which consists of light1, light2, light3... ), outfiles is output sequence, and numfiles is the number of images in the stack.
H
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