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you should be able to run all together. i do with excellent results. when using the eqmod and pulse guide do not use the st4 port from the ss auto guider. just plug the ss auto guider via usb to the laptop then from laptop to the mount via the eqmod interface.
don't know if this is the issue. it is the only thing i could think of as the configuration between the programs and hardware is pretty simple.
are you able to communicate properly between the planetarium softwareand eqmod and the mount?
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