I'm not sure as I'm new to EQ6 mounts and EQMOD, however, I think that when you park your EQ6 with EQMOD, it remembers your alignment and then you can just arc it up and go for it. I like EQMOD as it gives a huge range of functionality to the EQ series telescopes which really do lack supportive hand box software.
EQMOD
Good luck!
