Even with a planetarium program you still need to align the scope, unless you have perfect polar alignment, and your time is perfect etc.... The mount needs to know its motor position and know where it is pointing. I have never used the hand controllers with my EQ6 (syntrek version) and never will so can't help there, but you should be able to get a cable that runs from the HC to the computer for computer control. It is in the manual also.
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