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I did find a complex route to address this - open each wrong channel frame in DSS - stack them with no flats, Bias, Darks and stored them as a Tif, import them into Photoshop - change them to Grayscale and save then add them back into the Mono data for that channel in DSS - this time combining them with the other correctly identified mono frames per filter and stack them with Darks and flats and BIAS etc.
What a pain - will try to never do that mistake again!
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