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What I did was to make separate folders for my Lights, Darks, Bias and Flats, I put the shots in there idividual folders, that way there is no mixup. You just load each part of the set into the Auto Image Process, all your files are then kept separate and you can then rename your Master Dark, Bias or Flat to suit your exposure and keep them for future use if required.
Almost foolproof.
JohnG
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