Hey Diego,
Not convinced it's just flats, but it's a good idea to get a
lightbox or a
flat panel anyway for consistency.
If you like, pm me with a step by step of your workflow and I'll try to id the issue. Mega data helps of course but getting the most out of what you have is paramount imo And don't be disappointed, you've done very well considering you only took your first AP image just 7 short months ago!
Cheers
Andy