[ronnierigel]

Thanks everyone!

I've got to the point where ppm scrolls through the images. Now I need to put them into a folder however when I insert -overwrite or-outdir=output to place the aligned files into the directory the program states it doesn't recgnise the commands.

I'm sure its some syntax error but what??

The commands are meant to be in the square brackets right??

Are there meant to be gaps??

regards
ron