Might as well expose my ignorance (only way I'll learn):
What's a sub?
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Why are you hoping to get away from DSS later? its probably the most widely used stacking software out there.
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That's just how I roll. I have a maths, physics and scientific computing background. Building my own numerical tools lets me optimise things to my needs, have more control, and add new features as I see fit. I've written a fair amount of special purpose image processing software in the past - stuff that is just not available commercially because it's too niche. DSS is great though, don't get me wrong.