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Greg,
BPP displays a warning if you don't have bias, dark and flat files or masters, but you can click "Continue" and keep going.
Did you click on the Apply Global (little blue circle) on StarAlignment? So long as you specified a reference, added some files and set the output directory it should have written the files there. If something unexpected happens then it's always worth reading the log info on the process console.
Cheers,
Rick.
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