That's certainly odd. I was going to suggest using Quick Align as a diagnosis tool. I use it for the initial alignment. It works well (for me) and is much quicker than messing about with compasses, etc.
Even the 90 az/-69 alt answer doesn't make sense. With a latitude of -34. I'd expect an error of -124 or 56.
Did you try explicitly entering the Lat and Long ?
What version is the firmware in the hand controller and motor control board ?
Steve.
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