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What version of Registax are you using? In version 3 there is a button on the top right of the align page that when you click gives you the option of selecting two points around which the image will be rotated. Open your avi/bmps and select Rotate. Select your first alignment point and then Reg does and initial alignment. It then asks you to select a second alignment point and does a second alignment. Once that is finished you click "Limit" and then treat it like any other image enhancement.
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