Sounds like an issue with APT rather than EQMod/ PHD.
I have a very similar set up:
HEQ5/ EQMod/ CdC/ PHD2
Using either the QHY5Lii or Lodestar guide cameras with an ED80.
I use AstroArt for all my cameras and usually also for guiding.
Touch wood, no issues, no drama.
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