Hey Everyone,
I had solved the problem myself.
Turns out because my files were Nikon RAW i had to go into FITS settings and tell DSS that i was using RAW files. Was a pretty dumb problem.
I hope this helps someone who ran into the same problem as me.
http://www.iceinspace.com.au/forum/[...om/33coxgx.jpg[/IMG]
Thanks to everyone who helped.
