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Hi Luka,
I always do calibration (step 1 in your workflow) on the whole lot of subs from multiple nights and use subframe selecector on the whole lot to identify worst and best subs and then do a visual check with blink tool. Once you identify the best sub I use it as a reference for integration of all subs. (after doing a cosmetic correction and star alignment) I think this method is potentially more robust than doing separate lots for each night.
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