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Have you tried what LewisM said? Start up SGP and let it do its thing. When you start PHD2, click the camera selection button and choose the correct camera. It will remember this in your profile.
Note that PHD2 is not remembering whether it is an ASI1600 or ASI120 but whether you are using camera 1 or camera 2.
One possibility I can think of that has caused it to mess up is if you once started PHD2 first with only one camera connected so that became camera 1 and the only one availabeleto PHD2. In this case it could switch the camera back to camera 1 in your profile.
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