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I am using APP, given I have a HA filter in it I loaded all the HA subs, set the debayer to HA, loaded master dark and flat, calibrated then saved the calibrated (Mono) output files. Then I took the RGB lights I had, calibrated them with master dark and master flat and saved the calibrated results using the setting to split the channels so I ended up with approx 40 each of red, green and blue mono subs and 20 mono HA subs.
After all that I loaded them up and integrated by "filter" to get red, grren, blue and HA integrations and did an RGB combine in APP, saved the RGB image and the HA integration as Tif files and layered the HA in in Photoshop.
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